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Thesis Project Form

Title (tentative): Optimization and Evaluation of denoising techniques for Arterial Spin Labelling (ASL) based Cerebrovascular Reactivity (CVR) Mapping

Thesis advisor(s): Bonzano Laura, María Asunción Fernández Seara (University of Navarra) E-mail:
Address: Largo Daneo 3 (ex via De Toni 5), 2° piano Phone:
Description

Motivation and application domain
Arterial Spin Labelling (ASL) is a non-invasive MRI technique that enables the quantification of Cerebral Blood Flow (CBF). ASL can be used to estimate cerebrovascular reactivity (CVR) i.e. the ability of cerebral blood vessels to respond to changes in arterial CO2, as a result of breath-hold. However, the ASL signal is subject to low signal-to-noise ratio, which can affect the estimation of CVR. This thesis will explore different denoising strategies and investigate their effects on the estimation of CVR mapping.

General objectives and main activities
The candidate will develop a pipeline to preprocess and analyze ASL MRI data acquired during a breath-hold task. The candidate will investigate different denoising strategies and evaluate their effects on the CVR estimation. The candidate will perform the appropriate statistical analyses to evaluate the performance of denoising strategies to improve CVR estimation.

Training Objectives (technical/analytical tools, experimental methodologies)
The thesis will provide practical training to the candidate, who will acquire the skills to implement and use advanced ASL MRI preprocessing and analysis pipelines, from raw ASL data to CVR estimation and statistical analysis, from both theoretical and practical perspectives. The candidate will gain experience in ASL preprocessing, CBF quantification, CVR estimation, and the application of different denoising strategies, using MATLAB-based tools.

Place(s) where the thesis work will be carried out: Clínica Universidad de Navarra, Avenida Pío XII, 36, 31008 Pamplona, Navarra, Spain

Additional information

Pre-requisite abilities/skills: Fundamentals of MRI and Arterial spin labelling, biomedical signal and image processing, quantitative analysis of imaging data, processing pipeline to compute CVR from ASL data and image processing using MATLAB.

Maximum number of students: 1